¶ Annotation
¶ General Annotation Pipeline
- Bologna Annotation Resource Server for the annotation of protein sequences
GeneMark Web page hosting families of gene prediction programs- IslandViewer Integrates four different genomic island prediction methods: IslandPick, IslandPath-DIMOB, SIGI-HMM, and Islander
- KBase Large-scale bioinformatics system that enables users to upload their own data
- KEGG-Annotation Database contains three main components for genome/metagenome annotation
- ORFfinder Searches for open reading frames (ORFs) in the DNA sequence you enter
¶ Eukaryotic Genome Annotation Pipelines
- FungiDB Fungus database
- FungiPath Orthologous proteins in fungal genomes database
- PLEXdb Plant Expression Database, integrating new and rapidly expanding gene expression profile data sets
¶ Prokaryotic Genome Annotation Pipelines
- ATGCs Resource for micro- and macro-evolutionary studies of Bacteria and Archaea
- CuratedBLAST Finds curated proteins whose descriptions match the query
- JGI GOLD Genomes Online Database
- MG-RAST Metagenomic Rapid Annotations using Subsystems Technology
- NCBI Prokaryotic Genome Annotation Pipeline
- proGenomes2 Consistently annotated bacterial and archaeal genomes
- PubSEED SEED is a constantly updated integration of genomic data