¶ Structure
¶ Evolutionary Conserved Residues On Structure
CATH Classification of protein structures downloaded from the Protein Data Bank- ConSurf Server for the Identification of Functional Regions in Proteins
- SCOP2 Description of the structural and evolutionary relationships between all proteins whose structure is known
- UET Database offers pre-computed evolutionary trace analyses for the protein structure databank
¶ Ligand prediction
- BindUP Predicting DNA and RNA binding proteins using the electrostatic patches on the protein surface
- COACH Meta-server approach to protein-ligand binding site prediction
¶ Modeling Protein Structures
- 3DLigandSite Automated method for the prediction of ligand binding sites
- Dali Network service for comparing protein structures in 3D
- GalaxyWEB Web server for protein structure prediction, refinement, and related methods
- HawkDock Web server for the structural prediction and analysis of protein-protein complex
- I-TASSER Hierarchical approach to protein structure and function prediction
- IntFOLD Web resource for high performance protein structure and function prediction
- Molmil Browser-based protein structure viewer
- Protein Structure Prediction Center Advance the methods of identifying protein structure from sequence
- PROTEUS2 Comprehensive protein structure prediction and structure-based annotation
- PSIPRED Simple and accurate secondary structure prediction method
- RaptorX Protein structure prediction server
¶ Structural Base Alignments
- PIPSA Provided for the comparison of the electrostatic interaction properties of proteins
- RepeatsDB Lite Prediction of repetitive structural elements and units in tandem repeat proteins
- RNAcentral The non-coding RNA sequence database
¶ Structure Visualization Platforms
- Aquaria Allows for the visualization of protein structure of various proteins from numerous species
- Chimera Interactive visualization and analysis of molecular structures and related data
- Cn3D Allows you to view 3-dimensional structures from NCBI's Entrez Structure database
- EzMol Web server wizard for the rapid visualisation and image production of protein and nucleic acid structures
- iCn3D Viewer for interactive viewing of three-dimensional macromolecular structures and chemicals
- Jmol Viewer for chemical structures in 3D with features for chemicals, crystals, materials and biomolecules
- JPred A Protein Secondary Structure Prediction Server
- MolScript Creating detailed molecular graphics images from molecular 3D coordinates
- RasMol Biomolecular graphics for all
- Phyre Web-based services for protein structure prediction
- PyMOL Provide a means for creating high quality figures
- RCSB-PDB Makes PDB data available at no charge to all data consumers
- SWISS-MODEL Web-based integrated service dedicated to protein structure homology modelling
- Swiss PdbViewer Provides a user friendly interface allowing to analyze several proteins